About the Lab
Research Focus
Research in the Hodges lab focuses on altered epigenetic function in cancer and other diseases. We use interdisciplinary approaches, including epigenomics, live-cell super-resolution imaging, genome editing, and chemical biology, to understand epigenetic systems in disease settings. Our research is especially focused on new technologies, for example, improving cell-culture tumor models, as well as single-cell and single-molecule methods.
Chromatin and the Epigenome
The epigenetic landscape is the bridge that connects the genome with its environment. We have taken a special interest in BAF (SWI/SNF) and PBAF ATP-dependent chromatin remodelers, which are among the most frequently mutated epigenetic regulators in cancer. We aim to improve precision therapies for tumors bearing these mutations by identifying how these complexes alter the intrinsic properties of cells and their interaction with the tumor microenvironment.
Principal Investigator
Dr. Hodges research focuses on mechanisms of transcription and epigenetic function in human disease.
Research
Our lab is focused on the study of the disruption of chromatin regulatory systems is a widespread feature of many diseases, including cancer.
Publications
Our research projects and studies result in publications in PubMed and other scientific journals.
Lab News
Featured News: Study highlights role of disordered protein interactions in gene expression. View article.
Software
Epigenomic Workflows
Semi-automated Bash workflows for epigenomic analyses: RNA-seq, ChIP-seq, ATAC-seq, etc. Includes job-scheduling scripts for the Torque scheduler.
Hodges Lab Common Code
Common code used for R projects in the Hodges lab. Includes ggplot2 themes that permit specification of PostScript line width and other useful defaults.
If you are interested in the research we are doing, email Dr. Hodges for more information.
